Introduction

This talk will be about the Wolfram Data Repository resource containing genetic sequences of the SARS-CoV-2 virus.
In[]:=
ResourceSearch["Genetic Sequences for the SARS-CoV-2 Coronavirus"]
Out[]=
Name
ResourceType
ResourceObject
Description
RepositoryLocation
DocumentationLink
Genetic Sequences for the SARS-CoV-2 Coronavirus
DataResource
ResourceObject["Genetic Sequences for the SARS-CoV-2 Coronavirus"]
Released nucleotide sequences of the SARS-CoV-2 virus (the virus associated with ⋱
https://www.wolframcloud.com/objects/resourcesyste...
https://datarepository.wolframcloud.com/resources/...

Where is this data from?

This data is provided by the National Center for Biotechnology Information's Severe acute respiratory syndrome coronavirus 2 data hub:
​

What data is contained in this resource?

This data provides a Dataset of genetic sequences of the virus along with metadata providing context about those sequences:
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ResourceData["Genetic Sequences for the SARS-CoV-2 Coronavirus"]
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Accession
Species
Genus
Family
Length
Host
BioSample
Sequence
CollectionDate
ReleaseDate
GeographicLocation
NucleotideStatus
GenBankTitle
IsolationSource
Country
MN908947
Severe acute respiratory syndrome-related coronavirus
Betacoronavirus
Coronaviridae
29903
human
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAA ⋱
Dec 2019
Sun 12 Jan 2020
China
complete
Severe acute respiratory syndrome coronavirus 2 isolate Wuhan-Hu-1, complete genome
China
NC_045512
Severe acute respiratory syndrome-related coronavirus
Betacoronavirus
Coronaviridae
29903
human
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAA ⋱
Dec 2019
Mon 13 Jan 2020
China
refseq, complete
Wuhan seafood market pneumonia virus isolate Wuhan-Hu-1, complete genome
China
MN970003
Severe acute respiratory syndrome-related coronavirus
Betacoronavirus
Coronaviridae
290
human
TAAACACCTCATACCACTTATGTACAAAGGACTTCCTTGGAATGTAGTGCGTATAAAGATTGTACAAATGTTAAGTGACA ⋱
Wed 8 Jan 2020
Thu 23 Jan 2020
Thailand
Severe acute respiratory syndrome coronavirus 2 isolate SI200040-SP orf1ab polyp ⋱
lung, oronasopharynx
Thailand
MN970004
Severe acute respiratory syndrome-related coronavirus
Betacoronavirus
Coronaviridae
290
human
TAAACACCTCATACCACTTATGTACAAAGGACTTCCTTGGAATGTAGTGCGTATAAAGATTGTACAAATGTTAAGTGACA ⋱
Mon 13 Jan 2020
Thu 23 Jan 2020
Thailand
Severe acute respiratory syndrome coronavirus 2 isolate SI200121-SP orf1ab polyp ⋱
lung, oronasopharynx
Thailand
MN938384
Severe acute respiratory syndrome-related coronavirus
Betacoronavirus
Coronaviridae
29838
human
CAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTT ⋱
Fri 10 Jan 2020
Fri 24 Jan 2020
China
complete
Severe acute respiratory syndrome coronavirus 2 isolate 2019-nCoV_HKU-SZ-002a_2020, complete genome
oronasopharynx
China
MN938385
Severe acute respiratory syndrome-related coronavirus
Betacoronavirus
Coronaviridae
287
human
TGAGTTATGAGGATCAAGATGCACTTTTCGCATATACAAAACGTAATGTCATCCCTACTATAACTCAAATGAATCTTAAG ⋱
Jan 2020
Fri 24 Jan 2020
China
Severe acute respiratory syndrome coronavirus 2 isolate 2019-nCoV_HKU-SZ-001_202 ⋱
oronasopharynx
China
MN938386
Severe acute respiratory syndrome-related coronavirus
Betacoronavirus
Coronaviridae
287
human
TGAGTTATGAGGATCAAGATGCACTTTTCGCATATACAAAACGTAATGTCATCCCTACTATAACTCAAATGAATCTTAAG ⋱
Jan 2020
Fri 24 Jan 2020
China
Severe acute respiratory syndrome coronavirus 2 isolate 2019-nCoV_HKU-SZ-004_202 ⋱
oronasopharynx
China
MN938387
Severe acute respiratory syndrome-related coronavirus
Betacoronavirus
Coronaviridae
107
human
AATGTCTATGCAGATTCATTTGTAATTAGAGGTGATGAAGTCAGACAAATCGCTCCAGGGCAAACTGGAAAGATTGCTGA ⋱
Jan 2020
Fri 24 Jan 2020
China
Severe acute respiratory syndrome coronavirus 2 isolate 2019-nCoV_HKU-SZ-001_202 ⋱
oronasopharynx
China
MN938388
Severe acute respiratory syndrome-related coronavirus
Betacoronavirus
Coronaviridae
107
human
AATGTCTATGCAGATTCATTTGTAATTAGAGGTGATGAAGTCAGACAAATCGCTCCAGGGCAAACTGGAAAGATTGCTGA ⋱
Jan 2020
Fri 24 Jan 2020
China
Severe acute respiratory syndrome coronavirus 2 isolate 2019-nCoV_HKU-SZ-002b_20 ⋱
blood
China
MN938389
Severe acute respiratory syndrome-related coronavirus
Betacoronavirus
Coronaviridae
107
human
AATGTCTATGCAGATTCATTTGTAATTAGAGGTGATGAAGTCAGACAAATCGCTCCAGGGCAAACTGGAAAGATTGCTGA ⋱
Jan 2020
Fri 24 Jan 2020
China
Severe acute respiratory syndrome coronavirus 2 isolate 2019-nCoV_HKU-SZ-004_202 ⋱
oronasopharynx
China
MN938390
Severe acute respiratory syndrome-related coronavirus
Betacoronavirus
Coronaviridae
107
human
AATGTCTATGCAGATTCATTTGTAATTAGAGGTGATGAAGTCAGACAAATCGCTCCAGGGCAAACTGGAAAGATTGCTGA ⋱
Jan 2020
Fri 24 Jan 2020
China
Severe acute respiratory syndrome coronavirus 2 isolate 2019-nCoV_HKU-SZ-005_202 ⋱
oronasopharynx
China
MN975262
Severe acute respiratory syndrome-related coronavirus
Betacoronavirus
Coronaviridae
29891
human
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAA ⋱
Sat 11 Jan 2020
Fri 24 Jan 2020
China
complete
Severe acute respiratory syndrome coronavirus 2 isolate 2019-nCoV_HKU-SZ-005b_2020, complete genome
lung, oronasopharynx
China
MN975263
Severe acute respiratory syndrome-related coronavirus
Betacoronavirus
Coronaviridae
287
human
TGAGTTATGAGGATCAAGATGCACTTTTCGCATATACAAAACGTAATGTCATCCCTACTATAACTCAAATGAATCTTAAG ⋱
Jan 2020
Fri 24 Jan 2020
China
Severe acute respiratory syndrome coronavirus 2 isolate 2019-nCoV_HKU-SZ-007a_20 ⋱
oronasopharynx
China
MN975264
Severe acute respiratory syndrome-related coronavirus
Betacoronavirus
Coronaviridae
287
human
TGAGTTATGAGGATCAAGATGCACTTTTCGCATATACAAAACGTAATGTCATCCCTACTATAACTCAAATGAATCTTAAG ⋱
Jan 2020
Fri 24 Jan 2020
China
Severe acute respiratory syndrome coronavirus 2 isolate 2019-nCoV_HKU-SZ-007b_20 ⋱
oronasopharynx
China
MN975265
Severe acute respiratory syndrome-related coronavirus
Betacoronavirus
Coronaviridae
287
human
TGAGTTATGAGGATCAAGATGCACTTTTCGCATATACAAAACGTAATGTCATCCCTACTATAACTCAAATGAATCTTAAG ⋱
Jan 2020
Fri 24 Jan 2020
China
Severe acute respiratory syndrome coronavirus 2 isolate 2019-nCoV_HKU-SZ-007c_20 ⋱
lung, oronasopharynx
China
MN975266
Severe acute respiratory syndrome-related coronavirus
Betacoronavirus
Coronaviridae
107
human
AATGTCTATGCAGATTCATTTGTAATTAGAGGTGATGAAGTCAGACAAATCGCTCCAGGGCAAACTGGAAAGATTGCTGA ⋱
Jan 2020
Fri 24 Jan 2020
China
Severe acute respiratory syndrome coronavirus 2 isolate 2019-nCoV_HKU-SZ-007a_20 ⋱
oronasopharynx
China
MN975267
Severe acute respiratory syndrome-related coronavirus
Betacoronavirus
Coronaviridae
107
human
AATGTCTATGCAGATTCATTTGTAATTAGAGGTGATGAAGTCAGACAAATCGCTCCAGGGCAAACTGGAAAGATTGCTGA ⋱
Jan 2020
Fri 24 Jan 2020
China
Severe acute respiratory syndrome coronavirus 2 isolate 2019-nCoV_HKU-SZ-007b_20 ⋱
oronasopharynx
China
MN975268
Severe acute respiratory syndrome-related coronavirus
Betacoronavirus
Coronaviridae
107
human
AATGTCTATGCAGATTCATTTGTAATTAGAGGTGATGAAGTCAGACAAATCGCTCCAGGGCAAACTGGAAAGATTGCTGA ⋱
Jan 2020
Fri 24 Jan 2020
China
Severe acute respiratory syndrome coronavirus 2 isolate 2019-nCoV_HKU-SZ-007c_20 ⋱
lung, oronasopharynx
China
MN985325
Severe acute respiratory syndrome-related coronavirus
Betacoronavirus
Coronaviridae
29882
human
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAA ⋱
Sun 19 Jan 2020
Fri 24 Jan 2020
United States
complete
Severe acute respiratory syndrome coronavirus 2 isolate 2019-nCoV/USA-WA1/2020, complete genome
oronasopharynx
United States
MN988713
Severe acute respiratory syndrome-related coronavirus
Betacoronavirus
Coronaviridae
29882
human
ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG