Basic Experiments Workflow for Simple Epidemiological Models
Basic Experiments Workflow for Simple Epidemiological Models
# | Symbol | Description |
1 | TP[t] | Total Population |
2 | SP[t] | Susceptible Population |
3 | EP[t] | Exposed Population |
4 | INSP[t] | Infected Normally Symptomatic Population |
5 | ISSP[t] | Infected Severely Symptomatic Population |
6 | RP[t] | Recovered Population |
7 | MLP[t] | Money of Lost Productivity |
# | Symbol | Description |
1 | μ[TP] | Population death rate |
2 | μ[INSP] | Infected Normally Symptomatic Population death rate |
3 | μ[ISSP] | Infected Severely Symptomatic Population death rate |
4 | sspf[SP] | Severely Symptomatic Population Fraction |
5 | β[INSP] | Contact rate for the normally symptomatic population |
6 | β[ISSP] | Contact rate for the severely symptomatic population |
7 | aip | Average infectious period |
8 | aincp | Average incubation period |
9 | lpcr[ISSP,INSP] | Lost productivity cost rate (per person per day) |
# | Equation |
1 | ′ SP SPt μTP INSP[t] SP[t] β[INSP] TP[0] ISSP[t] SP[t] β[ISSP] TP[0] |
2 | ′ EP EPt 1 aincp μTP INSP[t] SP[t] β[INSP] TP[0] ISSP[t] SP[t] β[ISSP] TP[0] |
3 | ′ INSP INSP[t] aip EP[t] sspf[SP] aincp INSPt μINSP |
4 | ′ ISSP ISSP[t] aip EP[t] sspf[SP] aincp ISSPt μISSP |
5 | ′ RP INSP[t] ISSP[t] aip RPt μTP |
6 | ′ MLP lpcr[ISSP,INSP] RP[t] SP[t] |
# | Symbol | Value |
1 | TP[0] | 100000 |
2 | μTP | 1 45625 |
3 | μISSP | 0.035 aip |
4 | μINSP | 0.01 aip |
5 | β[ISSP] | 0.15 |
6 | β[INSP] | 0.15 |
7 | aip | 26 |
8 | aincp | 6 |
9 | sspf[SP] | 0.2 |
10 | lpcr[ISSP,INSP] | 1 |
# | Equation |
1 | SP[0]99998 |
2 | EP[0]0 |
3 | ISSP[0]1 |
4 | INSP[0]1 |
5 | RP[0]0 |
6 | MLP[0]0 |
# | Equation |
1 | ′ SP SPt μTP INSP[t] SP[t] β[INSP] TP[0] ISSP[t] SP[t] β[ISSP] TP[0] |
2 | ′ EP EPt 1 aincp μTP INSP[t] SP[t] β[INSP] TP[0] ISSP[t] SP[t] β[ISSP] TP[0] |
3 | ′ INSP INSP[t] aip EP[t] sspf[SP] aincp INSPt μINSP |
4 | ′ ISSP ISSP[t] aip EP[t] sspf[SP] aincp ISSPt μISSP |
5 | ′ RP INSP[t] ISSP[t] aip RPt μTP |
6 | ′ MLP lpcr[ISSP,INSP] RP[t] SP[t] |
# | Equation |
1 | ′ SP SPt μTP TPt μTP INSP[t] SP[t] β[INSP] TP[0] ISSP[t] SP[t] β[ISSP] TP[0] |
2 | ′ EP EPt 1 aincp μTP INSP[t] SP[t] β[INSP] TP[0] ISSP[t] SP[t] β[ISSP] TP[0] |
3 | ′ INSP INSP[t] aip EP[t] sspf[SP] aincp INSPt μINSP |
4 | ′ ISSP ISSP[t] aip EP[t] sspf[SP] aincp ISSPt μISSP |
5 | ′ RP INSP[t] ISSP[t] aip RPt μTP |
6 | ′ MLP lpcr[ISSP,INSP] RP[t] SP[t] |
# | Equation |
1 | ′ SP SPt μTP INSP[t] SP[t] β[INSP] TP[0] ISSP[t] SP[t] β[ISSP] TP[0] |
2 | ′ EP EPt 1 aincp μTP INSP[t] SP[t] β[INSP] TP[0] ISSP[t] SP[t] β[ISSP] TP[0] |
3 | ′ INSP INSP[t] aip EP[t] sspf[SP] aincp INSPt μINSP |
4 | ′ ISSP ISSP[t] aip EP[t] sspf[SP] aincp ISSPt μISSP |
5 | ′ RP INSP[t] ISSP[t] aip RPt μTP |
6 | ′ MLP lpcr[ISSP,INSP] RP[t] SP[t] |
7 | ′ IDP INSP[t] μ[INSP] ISSP[t] μ[ISSP] |
# | 1 |
1 | ′ SP SP[t] 45625 INSP[t]SP[t]β[INSP] 145400 ISSP[t]SP[t]β[ISSP] 145400 |
2 | ′ EP 1 45625 1 aincp INSP[t]SP[t]β[INSP] 145400 ISSP[t]SP[t]β[ISSP] 145400 |
3 | ′ INSP 1.01INSP[t] aip EP[t](1-sspf[SP]) aincp |
4 | ′ ISSP 1.035ISSP[t] aip EP[t]sspf[SP] aincp |
5 | ′ RP INSP[t]+ISSP[t] aip RP[t] 45625 |
6 | ′ MLP |
7 | ′ IDP 0.01INSP[t] aip 0.035ISSP[t] aip |
8 | SP[0]145399 |
9 | EP[0]0 |
10 | ISSP[0]0 |
11 | INSP[0]1 |
12 | RP[0]0 |
13 | MLP[0]0 |
14 | IDP[0]0 |
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