.nii and .swc 3d Scan Scientific Formats
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© 2012-Present CCN StudiosCreative Commons Attribution-NonCommercial-ShareAlike 4.0
.nii: Human Brain 3D Scan
Slices: Computed
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.swc:
Details about selected cellNeuroMorpho.Org ID : NMO_17317Cell Name : GH146-F-300000Archive Name : ChiangSpecies Name : drosophila melanogasterStrain : GH146-Gal4Structural Domains : No Dendrites, No Soma, AxonPhysical Integrity : Axon CompleteMorphological Attributes : No Diameter, 3D, AnglesMin Age : 5.0 daysMax Age : 15.0 daysGender : FemaleMin Weight : Not reportedMax Weight : Not reportedDevelopment : adultPrimary Brain Region : adult subesophageal zoneSecondary Brain Region : Left SaddleTertiary Brain Region : left Antennal Mechanosensory and Motor CentrePrimary Cell Class : principal cellSecondary Cell Class : Unknown neurotransmitterTertiary Cell Class : day3 BornOriginal Format : Custom.amExperiment Protocol : in vivoExperimental Condition : ControlStaining Method : green fluorescent proteinSlicing Direction : whole mountSlice Thickness : Not applicableTissue Shrinkage : Not reportedObjective Type : waterMagnification : 40xReconstruction Method : CustomDate of Deposition : 2012-01-26Date of Upload : 2014-12-11Persistence Vector : GH146-F-300000.pvecNote : Cell types and Brain regions were assigned with a heuristic process based on available metadata. This dataset was processed with a streamlined automated variant of the standardization procedure, additional details of which are published here. Digital reconstruction used a custom method after image segmentation by Amira. The SWC units for the neurons in this dataset are not expressed in micrometers. The exact scaling factors, which are different for each neuron, are not known, but our approximate estimate is 0.32 in XY and 0.26 in Z. Thus, the morphometric measurements can be compared within other neurons of this archive, but not across the rest of the database.When originally released, this reconstruction had been incompletely processed, and this issue was fixed in release 7.0 (Sep 2015).
